J5_9F1C_005
3D structure
- PDB id
- 9F1C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.78 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 9F1C|1|B8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F1C_005 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1183
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9F1C|1|B5|G|19
9F1C|1|B5|U|20
9F1C|1|B5|G|21
*
9F1C|1|B8|C|35
9F1C|1|B8|G|36
9F1C|1|B8|A|37
9F1C|1|B8|U|38
9F1C|1|B8|G|39
9F1C|1|B8|A|40
9F1C|1|B8|A|41
9F1C|1|B8|G|42
*
9F1C|1|B8|C|101
9F1C|1|B8|G|102
9F1C|1|B8|A|103
9F1C|1|B8|A|104
9F1C|1|B8|C|105
9F1C|1|B8|G|106
*
9F1C|1|B8|C|113
9F1C|1|B8|G|114
*
9F1C|1|B8|U|136
9F1C|1|B8|A|137
9F1C|1|B8|C|138
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BN
- Ribosomal protein L15
- Chain BX
- Large ribosomal subunit protein uL23
- Chain Bh
- 60S ribosomal protein L35
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- 60S ribosomal protein L39-like
Coloring options: