J5_9F1C_007
3D structure
- PDB id
- 9F1C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.78 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9F1C|1|B5|G|3352, 9F1C|1|B5|G|3357
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F1C_007 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1226
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F1C|1|B5|G|2698
9F1C|1|B5|C|2699
9F1C|1|B5|A|2700
9F1C|1|B5|A|2701
9F1C|1|B5|G|2702
9F1C|1|B5|C|2703
9F1C|1|B5|OMC|2704
9F1C|1|B5|G|2705
9F1C|1|B5|G|2706
*
9F1C|1|B5|U|2730
9F1C|1|B5|G|2731
*
9F1C|1|B5|U|3345
9F1C|1|B5|G|3346
*
9F1C|1|B5|C|3350
9F1C|1|B5|G|3351
9F1C|1|B5|G|3352
9F1C|1|B5|A|3353
9F1C|1|B5|C|3354
9F1C|1|B5|C|3355
9F1C|1|B5|A|3356
9F1C|1|B5|G|3357
9F1C|1|B5|G|3358
*
9F1C|1|B5|C|3567
9F1C|1|B5|A|3568
9F1C|1|B5|C|3569
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BB
- Ribosomal protein L3
- Chain BR
- Ribosomal protein L19
- Chain BV
- Ribosomal protein L23
- Chain BW
- Ribosomal protein L24
Coloring options: