J5_9F1C_009
3D structure
- PDB id
- 9F1C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.78 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9F1C|1|B5|G|3654, 9F1C|1|B5|A|4122, 9F1C|1|B5|G|4123, 9F1C|1|B5|A|4124, 9F1C|1|B5|A|4125, 9F1C|1|B5|A|4126
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F1C_009 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3139
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9F1C|1|B5|PSU|3652
9F1C|1|B5|U|3653
9F1C|1|B5|G|3654
9F1C|1|B5|A|3655
*
9F1C|1|B5|U|3934
9F1C|1|B5|U|3935
9F1C|1|B5|U|3936
9F1C|1|B5|G|3937
*
9F1C|1|B5|C|3950
9F1C|1|B5|A|3951
*
9F1C|1|B5|OMU|3973
9F1C|1|B5|OMG|3974
*
9F1C|1|B5|C|4121
9F1C|1|B5|A|4122
9F1C|1|B5|G|4123
9F1C|1|B5|A|4124
9F1C|1|B5|A|4125
9F1C|1|B5|A|4126
9F1C|1|B5|A|4127
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BA
- Large ribosomal subunit protein uL2
- Chain BN
- Ribosomal protein L15
- Chain BQ
- Large ribosomal subunit protein eL18
- Chain BT
- 60S ribosomal protein L21
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bb
- 60S ribosomal protein L29
- Chain Bo
- Large ribosomal subunit protein eL42
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