J5_9F1D_008
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9F1D|1|B5|A|3640, 9F1D|1|B5|A|4140, 9F1D|1|B5|U|4301, 9F1D|1|B5|U|4302
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F1D|1|B5|A|3635
9F1D|1|B5|G|3636
9F1D|1|B5|A|3637
9F1D|1|B5|A|3638
9F1D|1|B5|G|3639
9F1D|1|B5|A|3640
9F1D|1|B5|C|3641
9F1D|1|B5|C|3642
*
9F1D|1|B5|OMG|4138
9F1D|1|B5|G|4139
9F1D|1|B5|A|4140
9F1D|1|B5|U|4141
9F1D|1|B5|A|4142
9F1D|1|B5|A|4143
9F1D|1|B5|C|4144
9F1D|1|B5|U|4145
9F1D|1|B5|G|4146
*
9F1D|1|B5|C|4190
9F1D|1|B5|U|4191
9F1D|1|B5|U|4192
9F1D|1|B5|5MC|4193
9F1D|1|B5|G|4194
9F1D|1|B5|A|4195
9F1D|1|B5|U|4196
9F1D|1|B5|G|4197
9F1D|1|B5|U|4198
9F1D|1|B5|C|4199
*
9F1D|1|B5|G|4274
9F1D|1|B5|G|4275
9F1D|1|B5|UR3|4276
9F1D|1|B5|U|4277
9F1D|1|B5|PSU|4278
9F1D|1|B5|A|4279
9F1D|1|B5|G|4280
*
9F1D|1|B5|PSU|4298
9F1D|1|B5|A|4299
9F1D|1|B5|G|4300
9F1D|1|B5|U|4301
9F1D|1|B5|U|4302
9F1D|1|B5|U|4303
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain AT
- P-site tRNA
- Chain BA
- Large ribosomal subunit protein uL2
- Chain BB
- Ribosomal protein L3
- Chain BC
- 60S ribosomal protein L4
- Chain BI
- 60S ribosomal protein L10
- Chain BK
- Nascent chain
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bb
- 60S ribosomal protein L29
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