3D structure

PDB id
9FBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with P-site initiatior tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
9FBV|1|A|A|109, 9FBV|1|A|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9FBV_003 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.0965
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

9FBV|1|A|C|58
9FBV|1|A|A|59
9FBV|1|A|A|60
9FBV|1|A|G|61
*
9FBV|1|A|C|106
9FBV|1|A|G|107
9FBV|1|A|G|108
9FBV|1|A|A|109
9FBV|1|A|C|110
9FBV|1|A|G|111
9FBV|1|A|G|112
9FBV|1|A|G|113
*
9FBV|1|A|C|314
9FBV|1|A|A|315
9FBV|1|A|C|316
*
9FBV|1|A|G|337
9FBV|1|A|A|338
9FBV|1|A|C|339
*
9FBV|1|A|G|350
9FBV|1|A|G|351
9FBV|1|A|C|352
9FBV|1|A|A|353
9FBV|1|A|G|354

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain P
30S ribosomal protein S16
Chain T
30S ribosomal protein S20
Chain j
Large ribosomal subunit protein uL14
Chain o
Large ribosomal subunit protein bL19

Coloring options:


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