J5_9FCO_003
3D structure
- PDB id
- 9FCO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9FCO|1|B|A|109, 9FCO|1|B|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9FCO_003 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0842
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9FCO|1|B|C|58
9FCO|1|B|A|59
9FCO|1|B|A|60
9FCO|1|B|G|61
*
9FCO|1|B|C|106
9FCO|1|B|G|107
9FCO|1|B|G|108
9FCO|1|B|A|109
9FCO|1|B|C|110
9FCO|1|B|G|111
9FCO|1|B|G|112
9FCO|1|B|G|113
*
9FCO|1|B|C|314
9FCO|1|B|A|315
9FCO|1|B|C|316
*
9FCO|1|B|G|337
9FCO|1|B|A|338
9FCO|1|B|C|339
*
9FCO|1|B|G|350
9FCO|1|B|G|351
9FCO|1|B|C|352
9FCO|1|B|A|353
9FCO|1|B|G|354
Current chains
- Chain B
- 16S rRNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
- Chain T
- Small ribosomal subunit protein bS20
Coloring options: