Loop J5_9FQZ

3D structure

PDB id: 9FQZ (explore in PDB, NAKB, or RNA 3D Hub)
Description: CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å

Loop

Sequence: AAGAAGACC*(OMG)GAUAACUG*CUUCGAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUUU
Length: 42 nucleotides
Bulged bases: 9FQZ|1|L5|A|3908, 9FQZ|1|L5|A|4394, 9FQZ|1|L5|U|4395, 9FQZ|1|L5|G|4451, 9FQZ|1|L5|U|4555, 9FQZ|1|L5|U|4556
QA status: Modified nucleotides: OMG, UR3, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9FQZ|1|L5|A|3902
9FQZ|1|L5|A|3903
9FQZ|1|L5|G|3904
9FQZ|1|L5|A|3905
9FQZ|1|L5|A|3906
9FQZ|1|L5|G|3907
9FQZ|1|L5|A|3908
9FQZ|1|L5|C|3909
9FQZ|1|L5|C|3910
*
9FQZ|1|L5|OMG|4392
9FQZ|1|L5|G|4393
9FQZ|1|L5|A|4394
9FQZ|1|L5|U|4395
9FQZ|1|L5|A|4396
9FQZ|1|L5|A|4397
9FQZ|1|L5|C|4398
9FQZ|1|L5|U|4399
9FQZ|1|L5|G|4400
*
9FQZ|1|L5|C|4444
9FQZ|1|L5|U|4445
9FQZ|1|L5|U|4446
9FQZ|1|L5|C|4447
9FQZ|1|L5|G|4448
9FQZ|1|L5|A|4449
9FQZ|1|L5|U|4450
9FQZ|1|L5|G|4451
9FQZ|1|L5|U|4452
9FQZ|1|L5|C|4453
*
9FQZ|1|L5|G|4528
9FQZ|1|L5|G|4529
9FQZ|1|L5|UR3|4530
9FQZ|1|L5|U|4531
9FQZ|1|L5|PSU|4532
9FQZ|1|L5|A|4533
9FQZ|1|L5|G|4534
*
9FQZ|1|L5|PSU|4552
9FQZ|1|L5|A|4553
9FQZ|1|L5|G|4554
9FQZ|1|L5|U|4555
9FQZ|1|L5|U|4556
9FQZ|1|L5|U|4557
9FQZ|1|L5|U|4558

Current chains

Chain L5: LSU rRNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LB: 60S ribosomal protein L3
Chain LC: 60S ribosomal protein L4
Chain Lb: 60S ribosomal protein L29

J5_9FQZ_004