J5_9FRA_001

3D structure

PDB id

9FRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRA|1|2|C|30
9FRA|1|2|U|31
9FRA|1|2|A|32
9FRA|1|2|U|33
*
9FRA|1|2|A|408
9FRA|1|2|G|409
9FRA|1|2|U|410
9FRA|1|2|G|411
*
9FRA|1|2|C|426
9FRA|1|2|U|427
9FRA|1|2|U|428
9FRA|1|2|U|429
9FRA|1|2|U|430
9FRA|1|2|C|431
*
9FRA|1|2|G|451
9FRA|1|2|G|452
9FRA|1|2|A|453
9FRA|1|2|A|454
9FRA|1|2|U|455
9FRA|1|2|A|456
9FRA|1|2|A|457
9FRA|1|2|G|458
*
9FRA|1|2|C|504
9FRA|1|2|G|505
9FRA|1|2|A|506
9FRA|1|2|G|507

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain N

Small ribosomal subunit protein uS12

Chain V

Small ribosomal subunit protein eS24

Chain e

LSU ribosomal protein S30E (Rps30E)