J5_9FRK_001

3D structure

PDB id

9FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRK|1|2|C|30
9FRK|1|2|U|31
9FRK|1|2|A|32
9FRK|1|2|U|33
*
9FRK|1|2|A|408
9FRK|1|2|G|409
9FRK|1|2|U|410
9FRK|1|2|G|411
*
9FRK|1|2|C|426
9FRK|1|2|U|427
9FRK|1|2|U|428
9FRK|1|2|U|429
9FRK|1|2|U|430
9FRK|1|2|C|431
*
9FRK|1|2|G|451
9FRK|1|2|G|452
9FRK|1|2|A|453
9FRK|1|2|A|454
9FRK|1|2|U|455
9FRK|1|2|A|456
9FRK|1|2|A|457
9FRK|1|2|G|458
*
9FRK|1|2|C|504
9FRK|1|2|G|505
9FRK|1|2|A|506
9FRK|1|2|G|507

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain N

Small ribosomal subunit protein uS12

Chain V

Small ribosomal subunit protein eS24

Chain e

LSU ribosomal protein S30E (Rps30E)