J5_9FRL_001

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|C|30
9FRL|1|2|U|31
9FRL|1|2|A|32
9FRL|1|2|U|33
*
9FRL|1|2|A|408
9FRL|1|2|G|409
9FRL|1|2|U|410
9FRL|1|2|G|411
*
9FRL|1|2|C|426
9FRL|1|2|U|427
9FRL|1|2|U|428
9FRL|1|2|U|429
9FRL|1|2|U|430
9FRL|1|2|C|431
*
9FRL|1|2|G|451
9FRL|1|2|G|452
9FRL|1|2|A|453
9FRL|1|2|A|454
9FRL|1|2|U|455
9FRL|1|2|A|456
9FRL|1|2|A|457
9FRL|1|2|G|458
*
9FRL|1|2|C|504
9FRL|1|2|G|505
9FRL|1|2|A|506
9FRL|1|2|G|507

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain N

Small ribosomal subunit protein uS12

Chain V

Small ribosomal subunit protein eS24

Chain e

LSU ribosomal protein S30E (Rps30E)