J5_9FS6_002

3D structure

PDB id

9FS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAG*CGGACGGC*GUU*AGG*CGCAC

Length

23 nucleotides

Bulged bases

9FS6|1|2|A|56, 9FS6|1|2|A|89

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS6|1|2|G|54
9FS6|1|2|G|55
9FS6|1|2|A|56
9FS6|1|2|G|57
*
9FS6|1|2|C|86
9FS6|1|2|G|87
9FS6|1|2|G|88
9FS6|1|2|A|89
9FS6|1|2|C|90
9FS6|1|2|G|91
9FS6|1|2|G|92
9FS6|1|2|C|93
*
9FS6|1|2|G|319
9FS6|1|2|U|320
9FS6|1|2|U|321
*
9FS6|1|2|A|342
9FS6|1|2|G|343
9FS6|1|2|G|344
*
9FS6|1|2|C|355
9FS6|1|2|G|356
9FS6|1|2|C|357
9FS6|1|2|A|358
9FS6|1|2|C|359

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain E

Small ribosomal subunit protein eS4

Chain G

Small ribosomal subunit protein eS6

Chain J

Small ribosomal subunit protein eS8