J5_9FS8_001

3D structure

PDB id

9FS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aEF1A-like mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS8|1|2|C|30
9FS8|1|2|U|31
9FS8|1|2|A|32
9FS8|1|2|U|33
*
9FS8|1|2|A|408
9FS8|1|2|G|409
9FS8|1|2|U|410
9FS8|1|2|G|411
*
9FS8|1|2|C|426
9FS8|1|2|U|427
9FS8|1|2|U|428
9FS8|1|2|U|429
9FS8|1|2|U|430
9FS8|1|2|C|431
*
9FS8|1|2|G|451
9FS8|1|2|G|452
9FS8|1|2|A|453
9FS8|1|2|A|454
9FS8|1|2|U|455
9FS8|1|2|A|456
9FS8|1|2|A|457
9FS8|1|2|G|458
*
9FS8|1|2|C|504
9FS8|1|2|G|505
9FS8|1|2|A|506
9FS8|1|2|G|507

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain N

Small ribosomal subunit protein uS12

Chain V

Small ribosomal subunit protein eS24

Chain e

LSU ribosomal protein S30E (Rps30E)