J5_9FSF_001

3D structure

PDB id

9FSF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FSF|1|2|C|30
9FSF|1|2|U|31
9FSF|1|2|A|32
9FSF|1|2|U|33
*
9FSF|1|2|A|408
9FSF|1|2|G|409
9FSF|1|2|U|410
9FSF|1|2|G|411
*
9FSF|1|2|C|426
9FSF|1|2|U|427
9FSF|1|2|U|428
9FSF|1|2|U|429
9FSF|1|2|U|430
9FSF|1|2|C|431
*
9FSF|1|2|G|451
9FSF|1|2|G|452
9FSF|1|2|A|453
9FSF|1|2|A|454
9FSF|1|2|U|455
9FSF|1|2|A|456
9FSF|1|2|A|457
9FSF|1|2|G|458
*
9FSF|1|2|C|504
9FSF|1|2|G|505
9FSF|1|2|A|506
9FSF|1|2|G|507

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain N

Small ribosomal subunit protein uS12

Chain V

Small ribosomal subunit protein eS24

Chain e

LSU ribosomal protein S30E (Rps30E)