J5_9FY0_001

3D structure

PDB id

9FY0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FY0|1|2|C|30
9FY0|1|2|U|31
9FY0|1|2|A|32
9FY0|1|2|U|33
*
9FY0|1|2|A|408
9FY0|1|2|G|409
9FY0|1|2|U|410
9FY0|1|2|G|411
*
9FY0|1|2|C|426
9FY0|1|2|U|427
9FY0|1|2|U|428
9FY0|1|2|U|429
9FY0|1|2|U|430
9FY0|1|2|C|431
*
9FY0|1|2|G|451
9FY0|1|2|G|452
9FY0|1|2|A|453
9FY0|1|2|A|454
9FY0|1|2|U|455
9FY0|1|2|A|456
9FY0|1|2|A|457
9FY0|1|2|G|458
*
9FY0|1|2|C|504
9FY0|1|2|G|505
9FY0|1|2|A|506
9FY0|1|2|G|507

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain N

Small ribosomal subunit protein uS12

Chain V

Small ribosomal subunit protein eS24

Chain e

LSU ribosomal protein S30E (Rps30E)