J5_9G1Z_001
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 9G1Z|1|4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9G1Z_001 not in the Motif Atlas
- Homologous match to J5_8CRE_001
- Geometric discrepancy: 0.0394
- The information below is about J5_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9G1Z|1|1|A|19
9G1Z|1|1|G|20
9G1Z|1|1|G|21
*
9G1Z|1|4|C|35
9G1Z|1|4|G|36
9G1Z|1|4|A|37
9G1Z|1|4|U|38
9G1Z|1|4|G|39
9G1Z|1|4|A|40
9G1Z|1|4|A|41
9G1Z|1|4|G|42
*
9G1Z|1|4|U|102
9G1Z|1|4|G|103
9G1Z|1|4|A|104
9G1Z|1|4|A|105
9G1Z|1|4|C|106
9G1Z|1|4|G|107
*
9G1Z|1|4|C|115
9G1Z|1|4|G|116
*
9G1Z|1|4|C|137
9G1Z|1|4|A|138
9G1Z|1|4|U|139
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 8
- Ribosomal 60S subunit protein L25
- Chain AI
- Ribosomal 60S subunit protein L35A
- Chain AK
- Ribosomal protein L37
- Chain AM
- 60S ribosomal protein L39
- Chain v
- Ribosomal protein L15
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