J5_9G1Z_002
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9G1Z|1|1|U|1432
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9G1Z_002 not in the Motif Atlas
- Homologous match to J5_8CRE_002
- Geometric discrepancy: 0.0442
- The information below is about J5_8CRE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9G1Z|1|1|G|656
9G1Z|1|1|G|657
9G1Z|1|1|A|658
9G1Z|1|1|G|659
9G1Z|1|1|U|660
9G1Z|1|1|C|661
*
9G1Z|1|1|G|795
9G1Z|1|1|G|796
9G1Z|1|1|A|797
9G1Z|1|1|C|798
*
9G1Z|1|1|G|937
9G1Z|1|1|U|938
9G1Z|1|1|U|939
9G1Z|1|1|C|940
*
9G1Z|1|1|G|1371
9G1Z|1|1|C|1372
*
9G1Z|1|1|G|1427
9G1Z|1|1|C|1428
9G1Z|1|1|A|1429
9G1Z|1|1|G|1430
9G1Z|1|1|A|1431
9G1Z|1|1|U|1432
9G1Z|1|1|C|1433
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AB
- Ribosomal 60S subunit protein L28
- Chain AF
- Ribosomal 60S subunit protein L32
- Chain l
- Ribosomal 60S subunit protein L4B
- Chain t
- 60S ribosomal protein L13
- Chain v
- Ribosomal protein L15
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