J5_9G1Z_003
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGAAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 9G1Z|1|1|A|717, 9G1Z|1|1|A|780, 9G1Z|1|1|G|781
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9G1Z_003 not in the Motif Atlas
- Homologous match to J5_8CRE_003
- Geometric discrepancy: 0.0574
- The information below is about J5_8CRE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_23272.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9G1Z|1|1|C|673
9G1Z|1|1|G|674
9G1Z|1|1|A|675
9G1Z|1|1|G|676
*
9G1Z|1|1|C|700
9G1Z|1|1|G|701
9G1Z|1|1|U|702
9G1Z|1|1|A|703
9G1Z|1|1|A|704
*
9G1Z|1|1|U|711
9G1Z|1|1|G|712
9G1Z|1|1|A|713
9G1Z|1|1|A|714
9G1Z|1|1|C|715
9G1Z|1|1|G|716
9G1Z|1|1|A|717
9G1Z|1|1|A|718
9G1Z|1|1|G|719
*
9G1Z|1|1|C|745
9G1Z|1|1|G|746
9G1Z|1|1|A|747
*
9G1Z|1|1|U|778
9G1Z|1|1|A|779
9G1Z|1|1|A|780
9G1Z|1|1|G|781
9G1Z|1|1|A|782
9G1Z|1|1|G|783
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AB
- Ribosomal 60S subunit protein L28
- Chain AC
- 60S ribosomal protein L29
- Chain AJ
- 60S ribosomal protein L36
- Chain l
- Ribosomal 60S subunit protein L4B
- Chain t
- 60S ribosomal protein L13
- Chain y
- Ribosomal 60S subunit protein L18A
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