J5_9G4L_001

3D structure

PDB id

9G4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group II intron assembly intermediate Domain 1 to 3 "Partly open" state

Experimental method

ELECTRON MICROSCOPY

Resolution

4.01 Å

Loop

Sequence

UAUAG*CGAA*UUAG*CAAAC*GGAAA

Length

23 nucleotides

Bulged bases

9G4L|1|A|A|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G4L|1|A|U|24
9G4L|1|A|A|25
9G4L|1|A|U|26
9G4L|1|A|A|27
9G4L|1|A|G|28
*
9G4L|1|A|C|40
9G4L|1|A|G|41
9G4L|1|A|A|42
9G4L|1|A|A|43
*
9G4L|1|A|U|65
9G4L|1|A|U|66
9G4L|1|A|A|67
9G4L|1|A|G|68
*
9G4L|1|A|C|119
9G4L|1|A|A|120
9G4L|1|A|A|121
9G4L|1|A|A|122
9G4L|1|A|C|123
*
9G4L|1|A|G|243
9G4L|1|A|G|244
9G4L|1|A|A|245
9G4L|1|A|A|246
9G4L|1|A|A|247

Current chains

Chain A

GROUP IIC INTRON

Nearby chains