J5_9G8O_003

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCCACUUG*CAUGCCGACGGGCG*CGUGCAUU*ACCUCGGGCCGAU*ACGACC

Length

64 nucleotides

Bulged bases

9G8O|1|S2|U|128, 9G8O|1|S2|C|129, 9G8O|1|S2|G|130, 9G8O|1|S2|C|131, 9G8O|1|S2|U|132, 9G8O|1|S2|C|133, 9G8O|1|S2|C|134, 9G8O|1|S2|U|135, 9G8O|1|S2|C|136, 9G8O|1|S2|U|137, 9G8O|1|S2|C|138, 9G8O|1|S2|C|139, 9G8O|1|S2|C|142, 9G8O|1|S2|U|143, 9G8O|1|S2|U|144, 9G8O|1|S2|G|183, 9G8O|1|S2|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8O|1|S2|G|123
9G8O|1|S2|U|124
9G8O|1|S2|C|125
9G8O|1|S2|G|126
9G8O|1|S2|C|127
9G8O|1|S2|U|128
9G8O|1|S2|C|129
9G8O|1|S2|G|130
9G8O|1|S2|C|131
9G8O|1|S2|U|132
9G8O|1|S2|C|133
9G8O|1|S2|C|134
9G8O|1|S2|U|135
9G8O|1|S2|C|136
9G8O|1|S2|U|137
9G8O|1|S2|C|138
9G8O|1|S2|C|139
9G8O|1|S2|C|140
9G8O|1|S2|A|141
9G8O|1|S2|C|142
9G8O|1|S2|U|143
9G8O|1|S2|U|144
9G8O|1|S2|G|145
*
9G8O|1|S2|C|174
9G8O|1|S2|A|175
9G8O|1|S2|U|176
9G8O|1|S2|G|177
9G8O|1|S2|C|178
9G8O|1|S2|C|179
9G8O|1|S2|G|180
9G8O|1|S2|A|181
9G8O|1|S2|C|182
9G8O|1|S2|G|183
9G8O|1|S2|G|184
9G8O|1|S2|G|185
9G8O|1|S2|C|186
9G8O|1|S2|G|187
*
9G8O|1|S2|C|212
9G8O|1|S2|G|213
9G8O|1|S2|U|214
9G8O|1|S2|G|215
9G8O|1|S2|C|216
9G8O|1|S2|A|217
9G8O|1|S2|U|218
9G8O|1|S2|U|219
*
9G8O|1|S2|A|302
9G8O|1|S2|C|303
9G8O|1|S2|C|304
9G8O|1|S2|U|305
9G8O|1|S2|C|306
9G8O|1|S2|G|307
9G8O|1|S2|G|308
9G8O|1|S2|G|309
9G8O|1|S2|C|310
9G8O|1|S2|C|311
9G8O|1|S2|G|312
9G8O|1|S2|A|313
9G8O|1|S2|U|314
*
9G8O|1|S2|A|336
9G8O|1|S2|C|337
9G8O|1|S2|G|338
9G8O|1|S2|A|339
9G8O|1|S2|C|340
9G8O|1|S2|C|341

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8