J5_9GGR_001

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUGU*ACUUUC*GAAG*CAAG

Length

23 nucleotides

Bulged bases

9GGR|1|0|G|406, 9GGR|1|0|U|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9GGR_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.3907

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9GGR|1|0|C|36
9GGR|1|0|U|37
9GGR|1|0|G|38
9GGR|1|0|G|39
*
9GGR|1|0|C|403
9GGR|1|0|G|404
9GGR|1|0|U|405
9GGR|1|0|G|406
9GGR|1|0|U|407
*
9GGR|1|0|A|435
9GGR|1|0|C|436
9GGR|1|0|U|437
9GGR|1|0|U|438
9GGR|1|0|U|439
9GGR|1|0|C|440
*
9GGR|1|0|G|497
9GGR|1|0|A|498
9GGR|1|0|A|499
9GGR|1|0|G|500
*
9GGR|1|0|C|545
9GGR|1|0|A|546
9GGR|1|0|A|547
9GGR|1|0|G|548

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein uS4

Chain E

Small ribosomal subunit protein uS12