J5_9GGR_002
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9GGR|1|0|A|109, 9GGR|1|0|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9GGR_002 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1231
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9GGR|1|0|C|58
9GGR|1|0|A|59
9GGR|1|0|A|60
9GGR|1|0|G|61
*
9GGR|1|0|C|106
9GGR|1|0|G|107
9GGR|1|0|G|108
9GGR|1|0|A|109
9GGR|1|0|C|110
9GGR|1|0|G|111
9GGR|1|0|G|112
9GGR|1|0|G|113
*
9GGR|1|0|C|314
9GGR|1|0|A|315
9GGR|1|0|C|316
*
9GGR|1|0|G|337
9GGR|1|0|A|338
9GGR|1|0|C|339
*
9GGR|1|0|G|350
9GGR|1|0|G|351
9GGR|1|0|C|352
9GGR|1|0|A|353
9GGR|1|0|G|354
Current chains
- Chain 0
- 16S ribosomal RNA
Nearby chains
- Chain I
- Small ribosomal subunit protein bS16
- Chain X
- Large ribosomal subunit protein uL14
- Chain c
- Large ribosomal subunit protein bL19
- Chain u
- Small ribosomal subunit protein bS20
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