J5_9GGR_004

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9GGR_004 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0816

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9GGR|1|AA|C|36
9GGR|1|AA|U|37
9GGR|1|AA|G|38
9GGR|1|AA|G|39
*
9GGR|1|AA|C|403
9GGR|1|AA|G|404
9GGR|1|AA|U|405
9GGR|1|AA|G|406
*
9GGR|1|AA|C|436
9GGR|1|AA|U|437
9GGR|1|AA|U|438
9GGR|1|AA|U|439
9GGR|1|AA|C|440
9GGR|1|AA|A|441
9GGR|1|AA|G|442
*
9GGR|1|AA|C|492
9GGR|1|AA|A|493
9GGR|1|AA|G|494
9GGR|1|AA|A|495
9GGR|1|AA|A|496
9GGR|1|AA|G|497
9GGR|1|AA|A|498
9GGR|1|AA|A|499
9GGR|1|AA|G|500
*
9GGR|1|AA|C|545
9GGR|1|AA|A|546
9GGR|1|AA|A|547
9GGR|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS4

Chain z

Small ribosomal subunit protein uS12