J5_9GGR_006
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 9GGR|1|AV|U|50
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9GGR_006 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.1342
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9GGR|1|AV|C|47
9GGR|1|AV|G|48
9GGR|1|AV|A|49
9GGR|1|AV|U|50
9GGR|1|AV|G|51
9GGR|1|AV|A|52
9GGR|1|AV|A|53
9GGR|1|AV|G|54
*
9GGR|1|AV|C|116
9GGR|1|AV|G|117
9GGR|1|AV|A|118
9GGR|1|AV|A|119
9GGR|1|AV|U|120
9GGR|1|AV|G|121
*
9GGR|1|AV|C|130
9GGR|1|AV|A|131
*
9GGR|1|AV|U|148
9GGR|1|AV|A|149
9GGR|1|AV|U|150
*
9GGR|1|AV|A|176
9GGR|1|AV|G|177
9GGR|1|AV|G|178
Current chains
- Chain AV
- 23S ribosomal RNA
Nearby chains
- Chain Ax
- Large ribosomal subunit protein bL34
Coloring options: