J5_9GGR_016
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 9GGR|1|N|A|2062, 9GGR|1|N|A|2448, 9GGR|1|N|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9GGR|1|N|G|2057
9GGR|1|N|A|2058
9GGR|1|N|A|2059
9GGR|1|N|A|2060
9GGR|1|N|G|2061
9GGR|1|N|A|2062
9GGR|1|N|C|2063
9GGR|1|N|C|2064
*
9GGR|1|N|G|2446
9GGR|1|N|G|2447
9GGR|1|N|A|2448
9GGR|1|N|U|2449
9GGR|1|N|A|2450
9GGR|1|N|A|2451
9GGR|1|N|C|2452
9GGR|1|N|A|2453
*
9GGR|1|N|U|2500
9GGR|1|N|C|2501
9GGR|1|N|G|2502
9GGR|1|N|A|2503
9GGR|1|N|U|2504
9GGR|1|N|G|2505
9GGR|1|N|U|2506
*
9GGR|1|N|G|2583
9GGR|1|N|U|2584
9GGR|1|N|U|2585
9GGR|1|N|U|2586
9GGR|1|N|A|2587
9GGR|1|N|G|2588
*
9GGR|1|N|C|2606
9GGR|1|N|G|2607
9GGR|1|N|G|2608
9GGR|1|N|U|2609
9GGR|1|N|C|2610
9GGR|1|N|C|2611
Current chains
- Chain N
- 23S ribosomal RNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain M
- Transfer RNA; tRNA
- Chain P
- Large ribosomal subunit protein uL2
- Chain Q
- 50S ribosomal protein L3
- Chain R
- Large ribosomal subunit protein uL4
- Chain Y
- Large ribosomal subunit protein uL15
- Chain Z
- 50S ribosomal protein L16
- Chain f
- Large ribosomal subunit protein uL22
- Chain n
- Large ribosomal subunit protein bL32
- Chain s
- VemP nascent chain
Coloring options: