J5_9GHA_004

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9GHA|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9GHA_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0412

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GHA|1|a|C|47
9GHA|1|a|G|48
9GHA|1|a|A|49
9GHA|1|a|U|50
9GHA|1|a|G|51
9GHA|1|a|A|52
9GHA|1|a|A|53
9GHA|1|a|G|54
*
9GHA|1|a|C|116
9GHA|1|a|G|117
9GHA|1|a|A|118
9GHA|1|a|A|119
9GHA|1|a|U|120
9GHA|1|a|G|121
*
9GHA|1|a|C|130
9GHA|1|a|A|131
*
9GHA|1|a|U|148
9GHA|1|a|A|149
9GHA|1|a|U|150
*
9GHA|1|a|A|176
9GHA|1|a|G|177
9GHA|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34