J5_9GHC_004

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9GHC|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9GHC_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0513

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GHC|1|a|C|47
9GHC|1|a|G|48
9GHC|1|a|A|49
9GHC|1|a|U|50
9GHC|1|a|G|51
9GHC|1|a|A|52
9GHC|1|a|A|53
9GHC|1|a|G|54
*
9GHC|1|a|C|116
9GHC|1|a|G|117
9GHC|1|a|A|118
9GHC|1|a|A|119
9GHC|1|a|U|120
9GHC|1|a|G|121
*
9GHC|1|a|C|130
9GHC|1|a|A|131
*
9GHC|1|a|U|148
9GHC|1|a|A|149
9GHC|1|a|U|150
*
9GHC|1|a|A|176
9GHC|1|a|G|177
9GHC|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34