J5_9GHD_004

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9GHD|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9GHD_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0408

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GHD|1|a|C|47
9GHD|1|a|G|48
9GHD|1|a|A|49
9GHD|1|a|U|50
9GHD|1|a|G|51
9GHD|1|a|A|52
9GHD|1|a|A|53
9GHD|1|a|G|54
*
9GHD|1|a|C|116
9GHD|1|a|G|117
9GHD|1|a|A|118
9GHD|1|a|A|119
9GHD|1|a|U|120
9GHD|1|a|G|121
*
9GHD|1|a|C|130
9GHD|1|a|A|131
*
9GHD|1|a|U|148
9GHD|1|a|A|149
9GHD|1|a|U|150
*
9GHD|1|a|A|176
9GHD|1|a|G|177
9GHD|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34