J5_9GHG_001

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

9GHG|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9GHG_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0796

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GHG|1|A|C|47
9GHG|1|A|G|48
9GHG|1|A|A|49
9GHG|1|A|U|50
9GHG|1|A|G|51
9GHG|1|A|A|52
9GHG|1|A|A|53
9GHG|1|A|G|54
*
9GHG|1|A|C|115
9GHG|1|A|G|116
9GHG|1|A|A|117
9GHG|1|A|A|118
9GHG|1|A|U|119
9GHG|1|A|G|120
*
9GHG|1|A|C|129
9GHG|1|A|A|130
*
9GHG|1|A|U|149
9GHG|1|A|A|150
9GHG|1|A|U|151
*
9GHG|1|A|A|178
9GHG|1|A|A|179
9GHG|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23