3D structure

PDB id
9GHG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.22 Å

Loop

Sequence
GAAAGACC*GGA(H2U)AACA*UCG(2MA)UGUC*GGUUCAG*CGGUCC
Length
37 nucleotides
Bulged bases
9GHG|1|A|A|2089, 9GHG|1|A|A|2475, 9GHG|1|A|H2U|2476, 9GHG|1|A|U|2636
QA status
Modified nucleotides: H2U, 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9GHG|1|A|G|2084
9GHG|1|A|A|2085
9GHG|1|A|A|2086
9GHG|1|A|A|2087
9GHG|1|A|G|2088
9GHG|1|A|A|2089
9GHG|1|A|C|2090
9GHG|1|A|C|2091
*
9GHG|1|A|G|2473
9GHG|1|A|G|2474
9GHG|1|A|A|2475
9GHG|1|A|H2U|2476
9GHG|1|A|A|2477
9GHG|1|A|A|2478
9GHG|1|A|C|2479
9GHG|1|A|A|2480
*
9GHG|1|A|U|2527
9GHG|1|A|C|2528
9GHG|1|A|G|2529
9GHG|1|A|2MA|2530
9GHG|1|A|U|2531
9GHG|1|A|G|2532
9GHG|1|A|U|2533
9GHG|1|A|C|2534
*
9GHG|1|A|G|2609
9GHG|1|A|G|2610
9GHG|1|A|U|2611
9GHG|1|A|U|2612
9GHG|1|A|C|2613
9GHG|1|A|A|2614
9GHG|1|A|G|2615
*
9GHG|1|A|C|2633
9GHG|1|A|G|2634
9GHG|1|A|G|2635
9GHG|1|A|U|2636
9GHG|1|A|C|2637
9GHG|1|A|C|2638

Current chains

Chain A
23S rRNA

Nearby chains

Chain 5
Large ribosomal subunit protein bL32
Chain F
Transfer RNA; tRNA
Chain G
50S ribosomal protein L2
Chain H
50S ribosomal protein L3
Chain I
50S ribosomal protein L4
Chain O
50S ribosomal protein L15
Chain P
50S ribosomal protein L16
Chain V
50S ribosomal protein L22
Chain Z
50S ribosomal protein L27

Coloring options:

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