J5_9GR1_004

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9GR1|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9GR1_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0547

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GR1|1|a|C|47
9GR1|1|a|G|48
9GR1|1|a|A|49
9GR1|1|a|U|50
9GR1|1|a|G|51
9GR1|1|a|A|52
9GR1|1|a|A|53
9GR1|1|a|G|54
*
9GR1|1|a|C|116
9GR1|1|a|G|117
9GR1|1|a|A|118
9GR1|1|a|A|119
9GR1|1|a|U|120
9GR1|1|a|G|121
*
9GR1|1|a|C|130
9GR1|1|a|A|131
*
9GR1|1|a|U|148
9GR1|1|a|A|149
9GR1|1|a|U|150
*
9GR1|1|a|A|176
9GR1|1|a|G|177
9GR1|1|a|G|178

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34