J5_9GUL_003

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9GUL|1|L5|G|3620, 9GUL|1|L5|G|3625

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GUL|1|L5|G|2855
9GUL|1|L5|C|2856
9GUL|1|L5|A|2857
9GUL|1|L5|A|2858
9GUL|1|L5|G|2859
9GUL|1|L5|C|2860
9GUL|1|L5|OMC|2861
9GUL|1|L5|G|2862
9GUL|1|L5|G|2863
*
9GUL|1|L5|U|2887
9GUL|1|L5|G|2888
*
9GUL|1|L5|U|3613
9GUL|1|L5|G|3614
*
9GUL|1|L5|C|3618
9GUL|1|L5|G|3619
9GUL|1|L5|G|3620
9GUL|1|L5|A|3621
9GUL|1|L5|C|3622
9GUL|1|L5|C|3623
9GUL|1|L5|A|3624
9GUL|1|L5|G|3625
9GUL|1|L5|G|3626
*
9GUL|1|L5|C|3835
9GUL|1|L5|A|3836
9GUL|1|L5|C|3837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LR

60S ribosomal protein L19

Chain LV

60S ribosomal protein L23

Chain LW

60S ribosomal protein L24