J5_9GUL_005

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUGA*UUUG*CA*UG*CAGAAAA

Length

19 nucleotides

Bulged bases

9GUL|1|L5|G|3922, 9GUL|1|L5|A|4376, 9GUL|1|L5|G|4377, 9GUL|1|L5|A|4378, 9GUL|1|L5|A|4379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GUL|1|L5|U|3920
9GUL|1|L5|U|3921
9GUL|1|L5|G|3922
9GUL|1|L5|A|3923
*
9GUL|1|L5|U|4188
9GUL|1|L5|U|4189
9GUL|1|L5|U|4190
9GUL|1|L5|G|4191
*
9GUL|1|L5|C|4204
9GUL|1|L5|A|4205
*
9GUL|1|L5|U|4227
9GUL|1|L5|G|4228
*
9GUL|1|L5|C|4375
9GUL|1|L5|A|4376
9GUL|1|L5|G|4377
9GUL|1|L5|A|4378
9GUL|1|L5|A|4379
9GUL|1|L5|A|4380
9GUL|1|L5|A|4381

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a