J5_9GXX_001

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GXX|1|A|C|36
9GXX|1|A|U|37
9GXX|1|A|G|38
9GXX|1|A|G|39
*
9GXX|1|A|C|403
9GXX|1|A|G|404
9GXX|1|A|U|405
9GXX|1|A|G|406
*
9GXX|1|A|C|436
9GXX|1|A|U|437
9GXX|1|A|U|438
9GXX|1|A|U|439
9GXX|1|A|C|440
*
9GXX|1|A|G|497
9GXX|1|A|A|498
9GXX|1|A|A|499
9GXX|1|A|G|500
*
9GXX|1|A|C|545
9GXX|1|A|A|546
9GXX|1|A|A|547
9GXX|1|A|G|548

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS12