J5_9GXX_005

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9GXX|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9GXX_005 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0479

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GXX|1|a|C|47
9GXX|1|a|G|48
9GXX|1|a|A|49
9GXX|1|a|U|50
9GXX|1|a|G|51
9GXX|1|a|A|52
9GXX|1|a|A|53
9GXX|1|a|G|54
*
9GXX|1|a|C|116
9GXX|1|a|G|117
9GXX|1|a|A|118
9GXX|1|a|A|119
9GXX|1|a|U|120
9GXX|1|a|G|121
*
9GXX|1|a|C|130
9GXX|1|a|A|131
*
9GXX|1|a|U|148
9GXX|1|a|A|149
9GXX|1|a|U|150
*
9GXX|1|a|A|176
9GXX|1|a|G|177
9GXX|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34