J5_9GY4_002
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 9GY4|1|5|C|2289, 9GY4|1|5|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9GY4_002 not in the Motif Atlas
- Homologous match to J5_8CRE_002
- Geometric discrepancy: 0.0728
- The information below is about J5_8CRE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9GY4|1|5|G|1335
9GY4|1|5|G|1336
9GY4|1|5|A|1337
9GY4|1|5|G|1338
9GY4|1|5|U|1339
9GY4|1|5|C|1340
*
9GY4|1|5|G|1516
9GY4|1|5|G|1517
9GY4|1|5|A|1518
9GY4|1|5|C|1519
*
9GY4|1|5|G|1658
9GY4|1|5|U|1659
9GY4|1|5|U|1660
9GY4|1|5|C|1661
*
9GY4|1|5|G|2288
9GY4|1|5|C|2289
9GY4|1|5|C|2290
*
9GY4|1|5|G|2345
9GY4|1|5|C|2346
9GY4|1|5|A|2347
9GY4|1|5|G|2348
9GY4|1|5|A|2349
9GY4|1|5|U|2350
9GY4|1|5|C|2351
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Le
- 60S ribosomal protein L32
- Chain Lr
- 60S ribosomal protein L28
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