J5_9H3R_004

3D structure

PDB id

9H3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

GAAAGACC*GGAUAA*UGU*GUUUAG*CGGUCCC

Length

30 nucleotides

Bulged bases

9H3R|1|A|A|2060, 9H3R|1|A|G|2447, 9H3R|1|A|A|2448, 9H3R|1|A|U|2449, 9H3R|1|A|A|2450, 9H3R|1|A|G|2505, 9H3R|1|A|U|2585, 9H3R|1|A|U|2586, 9H3R|1|A|U|2609, 9H3R|1|A|C|2610, 9H3R|1|A|C|2611

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3R|1|A|G|2057
9H3R|1|A|A|2058
9H3R|1|A|A|2059
9H3R|1|A|A|2060
9H3R|1|A|G|2061
9H3R|1|A|A|2062
9H3R|1|A|C|2063
9H3R|1|A|C|2064
*
9H3R|1|A|G|2446
9H3R|1|A|G|2447
9H3R|1|A|A|2448
9H3R|1|A|U|2449
9H3R|1|A|A|2450
9H3R|1|A|A|2451
*
9H3R|1|A|U|2504
9H3R|1|A|G|2505
9H3R|1|A|U|2506
*
9H3R|1|A|G|2583
9H3R|1|A|U|2584
9H3R|1|A|U|2585
9H3R|1|A|U|2586
9H3R|1|A|A|2587
9H3R|1|A|G|2588
*
9H3R|1|A|C|2606
9H3R|1|A|G|2607
9H3R|1|A|G|2608
9H3R|1|A|U|2609
9H3R|1|A|C|2610
9H3R|1|A|C|2611
9H3R|1|A|C|2612

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15