J5_9H3S_001

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9H3S|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9H3S_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1245

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9H3S|1|A|C|47
9H3S|1|A|G|48
9H3S|1|A|A|49
9H3S|1|A|U|50
9H3S|1|A|G|51
9H3S|1|A|A|52
9H3S|1|A|A|53
9H3S|1|A|G|54
*
9H3S|1|A|C|116
9H3S|1|A|G|117
9H3S|1|A|A|118
9H3S|1|A|A|119
9H3S|1|A|U|120
9H3S|1|A|G|121
*
9H3S|1|A|C|130
9H3S|1|A|A|131
*
9H3S|1|A|U|148
9H3S|1|A|A|149
9H3S|1|A|U|150
*
9H3S|1|A|A|176
9H3S|1|A|G|177
9H3S|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34