J5_9H3V_005

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UUUAC*GUUUG*CU*AG*CGGAUAAAA

Length

23 nucleotides

Bulged bases

9H3V|1|A|U|2076, 9H3V|1|A|U|2243, 9H3V|1|A|U|2245, 9H3V|1|A|A|2430, 9H3V|1|A|U|2431, 9H3V|1|A|A|2432, 9H3V|1|A|A|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3V|1|A|U|2074
9H3V|1|A|U|2075
9H3V|1|A|U|2076
9H3V|1|A|A|2077
9H3V|1|A|C|2078
*
9H3V|1|A|G|2242
9H3V|1|A|U|2243
9H3V|1|A|U|2244
9H3V|1|A|U|2245
9H3V|1|A|G|2246
*
9H3V|1|A|C|2258
9H3V|1|A|U|2259
*
9H3V|1|A|A|2281
9H3V|1|A|G|2282
*
9H3V|1|A|C|2427
9H3V|1|A|G|2428
9H3V|1|A|G|2429
9H3V|1|A|A|2430
9H3V|1|A|U|2431
9H3V|1|A|A|2432
9H3V|1|A|A|2433
9H3V|1|A|A|2434
9H3V|1|A|A|2435

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein bL27

Chain X

Large ribosomal subunit protein bL28