J5_9H4N_003

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9H4N|1|A2|G|3276, 9H4N|1|A2|G|3281

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|G|2610
9H4N|1|A2|C|2611
9H4N|1|A2|A|2612
9H4N|1|A2|A|2613
9H4N|1|A2|G|2614
9H4N|1|A2|C|2615
9H4N|1|A2|OMC|2616
9H4N|1|A2|G|2617
9H4N|1|A2|G|2618
*
9H4N|1|A2|U|2642
9H4N|1|A2|G|2643
*
9H4N|1|A2|U|3269
9H4N|1|A2|G|3270
*
9H4N|1|A2|C|3274
9H4N|1|A2|G|3275
9H4N|1|A2|G|3276
9H4N|1|A2|A|3277
9H4N|1|A2|C|3278
9H4N|1|A2|C|3279
9H4N|1|A2|A|3280
9H4N|1|A2|G|3281
9H4N|1|A2|G|3282
*
9H4N|1|A2|C|3491
9H4N|1|A2|A|3492
9H4N|1|A2|C|3493

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain L2

Large ribosomal subunit protein eL19

Chain P2

60S ribosomal protein L23

Chain Q2

Large ribosomal subunit protein eL24

Chain m2

Small subunit ribosomal RNA; SSU rRNA