J5_9H4N_005
3D structure
- PDB id
- 9H4N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPL13 (eL13)-mutant 80S ribosome from mouse
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9H4N|1|A2|G|3578, 9H4N|1|A2|A|4028, 9H4N|1|A2|G|4029, 9H4N|1|A2|A|4030, 9H4N|1|A2|A|4031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H4N|1|A2|U|3576
9H4N|1|A2|U|3577
9H4N|1|A2|G|3578
9H4N|1|A2|A|3579
*
9H4N|1|A2|U|3840
9H4N|1|A2|U|3841
9H4N|1|A2|U|3842
9H4N|1|A2|G|3843
*
9H4N|1|A2|C|3856
9H4N|1|A2|A|3857
*
9H4N|1|A2|U|3879
9H4N|1|A2|G|3880
*
9H4N|1|A2|C|4027
9H4N|1|A2|A|4028
9H4N|1|A2|G|4029
9H4N|1|A2|A|4030
9H4N|1|A2|A|4031
9H4N|1|A2|A|4032
9H4N|1|A2|A|4033
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain D2
- Large ribosomal subunit protein uL2
- Chain H1
- 60S ribosomal protein L15
- Chain K2
- Large ribosomal subunit protein eL18
- Chain N2
- Large ribosomal subunit protein eL21
- Chain U2
- 60S ribosomal protein L27a
- Chain V2
- Large ribosomal subunit protein eL29
- Chain i2
- Large ribosomal subunit protein eL42
- Chain n2
- Transfer RNA; tRNA
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