J5_9H4N_006
3D structure
- PDB id
- 9H4N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPL13 (eL13)-mutant 80S ribosome from mouse
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAUU*AAUAG
- Length
- 28 nucleotides
- Bulged bases
- 9H4N|1|m2|A|527, 9H4N|1|m2|C|595
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H4N|1|m2|C|30
9H4N|1|m2|U|31
9H4N|1|m2|U|32
9H4N|1|m2|G|33
9H4N|1|m2|U|34
*
9H4N|1|m2|A|523
9H4N|1|m2|A|524
9H4N|1|m2|A|525
9H4N|1|m2|U|526
9H4N|1|m2|A|527
9H4N|1|m2|A|528
9H4N|1|m2|C|529
*
9H4N|1|m2|G|560
9H4N|1|m2|G|561
9H4N|1|m2|A|562
9H4N|1|m2|A|563
9H4N|1|m2|U|564
9H4N|1|m2|G|565
*
9H4N|1|m2|C|594
9H4N|1|m2|C|595
9H4N|1|m2|A|596
9H4N|1|m2|U|597
9H4N|1|m2|U|598
*
9H4N|1|m2|A|642
9H4N|1|m2|A|643
9H4N|1|m2|U|644
9H4N|1|m2|A|645
9H4N|1|m2|G|646
Current chains
- Chain m2
- 18S ribosomal RNA
Nearby chains
- Chain E3
- Small ribosomal subunit protein uS12
- Chain L3
- Small ribosomal subunit protein uS4
- Chain T3
- 40S ribosomal protein S30
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