J5_9H4N_008
3D structure
- PDB id
- 9H4N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPL13 (eL13)-mutant 80S ribosome from mouse
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- CAUGUCUAAG*CUGCGAAUGGC*GAG*CAC*GGCAG
- Length
- 32 nucleotides
- Bulged bases
- 9H4N|1|m2|U|55, 9H4N|1|m2|A|92, 9H4N|1|m2|C|474
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H4N|1|m2|C|53
9H4N|1|m2|A|54
9H4N|1|m2|U|55
9H4N|1|m2|G|56
9H4N|1|m2|U|57
9H4N|1|m2|C|58
9H4N|1|m2|U|59
9H4N|1|m2|A|60
9H4N|1|m2|A|61
9H4N|1|m2|G|62
*
9H4N|1|m2|C|86
9H4N|1|m2|U|87
9H4N|1|m2|G|88
9H4N|1|m2|C|89
9H4N|1|m2|G|90
9H4N|1|m2|A|91
9H4N|1|m2|A|92
9H4N|1|m2|U|93
9H4N|1|m2|G|94
9H4N|1|m2|G|95
9H4N|1|m2|C|96
*
9H4N|1|m2|G|436
9H4N|1|m2|A|437
9H4N|1|m2|G|438
*
9H4N|1|m2|C|459
9H4N|1|m2|A|460
9H4N|1|m2|C|461
*
9H4N|1|m2|G|472
9H4N|1|m2|G|473
9H4N|1|m2|C|474
9H4N|1|m2|A|475
9H4N|1|m2|G|476
Current chains
- Chain m2
- 18S ribosomal RNA
Nearby chains
- Chain K3
- 40S ribosomal protein S6
- Chain L3
- Small ribosomal subunit protein uS4
- Chain P2
- 60S ribosomal protein L23
- Chain Q3
- Small ribosomal subunit protein eS24
- Chain r2
- Small ribosomal subunit protein eS4
Coloring options: