J5_9H4N_009

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GUCGCUCGUACUU*AUGCCGACGGG*UG*CCG*CGACC

Length

34 nucleotides

Bulged bases

9H4N|1|m2|G|126, 9H4N|1|m2|C|127, 9H4N|1|m2|G|130, 9H4N|1|m2|C|142, 9H4N|1|m2|U|143, 9H4N|1|m2|C|313

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|m2|G|123
9H4N|1|m2|U|124
9H4N|1|m2|C|125
9H4N|1|m2|G|126
9H4N|1|m2|C|127
9H4N|1|m2|U|128
9H4N|1|m2|C|129
9H4N|1|m2|G|130
9H4N|1|m2|U|140
9H4N|1|m2|A|141
9H4N|1|m2|C|142
9H4N|1|m2|U|143
9H4N|1|m2|U|144
*
9H4N|1|m2|A|175
9H4N|1|m2|U|176
9H4N|1|m2|G|177
9H4N|1|m2|C|178
9H4N|1|m2|C|179
9H4N|1|m2|G|180
9H4N|1|m2|A|181
9H4N|1|m2|C|182
9H4N|1|m2|G|183
9H4N|1|m2|G|184
9H4N|1|m2|G|185
*
9H4N|1|m2|U|216
9H4N|1|m2|G|217
*
9H4N|1|m2|C|312
9H4N|1|m2|C|313
9H4N|1|m2|G|314
*
9H4N|1|m2|C|339
9H4N|1|m2|G|340
9H4N|1|m2|A|341
9H4N|1|m2|C|342
9H4N|1|m2|C|343

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain K3

40S ribosomal protein S6

Chain r2

Small ribosomal subunit protein eS4