J5_9H4N_011
3D structure
- PDB id
- 9H4N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPL13 (eL13)-mutant 80S ribosome from mouse
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- AUCUUGGG*CCUCU*AAGCGUUU*AAUGGAAUAGG*CAUGAUU
- Length
- 39 nucleotides
- Bulged bases
- 9H4N|1|m2|C|689, 9H4N|1|m2|U|690, 9H4N|1|m2|A|797, 9H4N|1|m2|G|798, 9H4N|1|m2|U|873, 9H4N|1|m2|G|875, 9H4N|1|m2|A|915
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H4N|1|m2|A|687
9H4N|1|m2|U|688
9H4N|1|m2|C|689
9H4N|1|m2|U|690
9H4N|1|m2|U|691
9H4N|1|m2|G|692
9H4N|1|m2|G|693
9H4N|1|m2|G|694
*
9H4N|1|m2|C|741
9H4N|1|m2|C|748
9H4N|1|m2|U|749
9H4N|1|m2|C|750
9H4N|1|m2|U|751
*
9H4N|1|m2|A|796
9H4N|1|m2|A|797
9H4N|1|m2|G|798
9H4N|1|m2|C|799
9H4N|1|m2|G|800
9H4N|1|m2|U|801
9H4N|1|m2|U|802
9H4N|1|m2|U|803
*
9H4N|1|m2|A|866
9H4N|1|m2|A|867
9H4N|1|m2|U|868
9H4N|1|m2|G|869
9H4N|1|m2|G|870
9H4N|1|m2|A|871
9H4N|1|m2|A|872
9H4N|1|m2|U|873
9H4N|1|m2|A|874
9H4N|1|m2|G|875
9H4N|1|m2|G|876
*
9H4N|1|m2|C|914
9H4N|1|m2|A|915
9H4N|1|m2|U|916
9H4N|1|m2|G|917
9H4N|1|m2|A|918
9H4N|1|m2|U|919
9H4N|1|m2|U|920
Current chains
- Chain m2
- 18S ribosomal RNA
Nearby chains
- Chain E3
- Small ribosomal subunit protein uS12
- Chain L2
- Large ribosomal subunit protein eL19
- Chain N3
- Small ribosomal subunit protein uS15
- Chain P3
- Small ribosomal subunit protein uS8
- Chain r2
- Small ribosomal subunit protein eS4
- Chain w2
- Small ribosomal subunit protein uS17
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