J5_9H8G_003
3D structure
- PDB id
- 9H8G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex 5 30S-GE81112
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.09 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9H8G|1|A|A|109, 9H8G|1|A|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9H8G_003 not in the Motif Atlas
- Homologous match to J5_8B0X_003
- Geometric discrepancy: 0.0556
- The information below is about J5_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.3
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9H8G|1|A|C|58
9H8G|1|A|A|59
9H8G|1|A|A|60
9H8G|1|A|G|61
*
9H8G|1|A|C|106
9H8G|1|A|G|107
9H8G|1|A|G|108
9H8G|1|A|A|109
9H8G|1|A|C|110
9H8G|1|A|G|111
9H8G|1|A|G|112
9H8G|1|A|G|113
*
9H8G|1|A|C|314
9H8G|1|A|A|315
9H8G|1|A|C|316
*
9H8G|1|A|G|337
9H8G|1|A|A|338
9H8G|1|A|C|339
*
9H8G|1|A|G|350
9H8G|1|A|G|351
9H8G|1|A|C|352
9H8G|1|A|A|353
9H8G|1|A|G|354
Current chains
- Chain A
- 16S rRNA fragment (1078-MER)
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
- Chain T
- Small ribosomal subunit protein bS20
Coloring options: