J5_9H9J_003

3D structure

PDB id

9H9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9H9J|1|A|A|109, 9H9J|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H9J|1|A|C|58
9H9J|1|A|A|59
9H9J|1|A|A|60
9H9J|1|A|G|61
*
9H9J|1|A|C|106
9H9J|1|A|G|107
9H9J|1|A|G|108
9H9J|1|A|A|109
9H9J|1|A|C|110
9H9J|1|A|G|111
9H9J|1|A|G|112
9H9J|1|A|G|113
*
9H9J|1|A|C|314
9H9J|1|A|A|315
9H9J|1|A|C|316
*
9H9J|1|A|G|337
9H9J|1|A|A|338
9H9J|1|A|C|339
*
9H9J|1|A|G|350
9H9J|1|A|G|351
9H9J|1|A|C|352
9H9J|1|A|A|353
9H9J|1|A|G|354

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20