J5_9HMW_003
3D structure
- PDB id
- 9HMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- CGAG*CGCAA*UGAUUG*CGA*UGUGAG
- Length
- 24 nucleotides
- Bulged bases
- 9HMW|1|A|U|730, 9HMW|1|A|U|731, 9HMW|1|A|U|793, 9HMW|1|A|G|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HMW|1|A|C|687
9HMW|1|A|G|688
9HMW|1|A|A|689
9HMW|1|A|G|690
*
9HMW|1|A|C|716
9HMW|1|A|G|717
9HMW|1|A|C|718
9HMW|1|A|A|719
9HMW|1|A|A|720
*
9HMW|1|A|U|727
9HMW|1|A|G|728
9HMW|1|A|A|729
9HMW|1|A|U|730
9HMW|1|A|U|731
9HMW|1|A|G|732
*
9HMW|1|A|C|758
9HMW|1|A|G|759
9HMW|1|A|A|760
*
9HMW|1|A|U|791
9HMW|1|A|G|792
9HMW|1|A|U|793
9HMW|1|A|G|794
9HMW|1|A|A|795
9HMW|1|A|G|796
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AG
- Large ribosomal subunit protein eL13z
- Chain AJ
- Large ribosomal subunit protein eL18x
- Chain AM
- Large ribosomal subunit protein eL21z/eL21y
- Chain AR
- 60S ribosomal protein L29
- Chain AX
- Large ribosomal subunit protein eL36y
- Chain BT
- Large ribosomal subunit protein uL4z
- Chain Ha
- Large ribosomal subunit protein uL15x
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