J5_9HMW_007

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

9HMW|1|h1|C|546

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|C|31
9HMW|1|h1|U|32
9HMW|1|h1|U|33
9HMW|1|h1|G|34
9HMW|1|h1|U|35
*
9HMW|1|h1|A|475
9HMW|1|h1|A|476
9HMW|1|h1|A|477
9HMW|1|h1|U|478
9HMW|1|h1|A|479
9HMW|1|h1|A|480
9HMW|1|h1|C|481
*
9HMW|1|h1|G|511
9HMW|1|h1|G|512
9HMW|1|h1|A|513
9HMW|1|h1|A|514
9HMW|1|h1|U|515
9HMW|1|h1|G|516
*
9HMW|1|h1|C|545
9HMW|1|h1|C|546
9HMW|1|h1|A|547
9HMW|1|h1|U|548
*
9HMW|1|h1|A|594
9HMW|1|h1|U|595
9HMW|1|h1|A|596
9HMW|1|h1|OMG|597

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AB

Small ribosomal subunit protein uS4y

Chain Pa

Small ribosomal subunit protein eS30z/eS30y/eS30x

Chain Va

Small ribosomal subunit protein uS12y