J5_9HMW_010

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GGUAACUACUACUC*GUGCAACAAACC*GACG*CGG*CGC

Length

36 nucleotides

Bulged bases

9HMW|1|h1|U|129, 9HMW|1|h1|A|131, 9HMW|1|h1|C|132, 9HMW|1|h1|U|133, 9HMW|1|h1|C|138, 9HMW|1|h1|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|G|127
9HMW|1|h1|G|128
9HMW|1|h1|U|129
9HMW|1|h1|A|130
9HMW|1|h1|A|131
9HMW|1|h1|C|132
9HMW|1|h1|U|133
9HMW|1|h1|A|134
9HMW|1|h1|C|135
9HMW|1|h1|U|136
9HMW|1|h1|A|137
9HMW|1|h1|C|138
9HMW|1|h1|U|139
9HMW|1|h1|C|140
*
9HMW|1|h1|G|171
9HMW|1|h1|U|172
9HMW|1|h1|G|173
9HMW|1|h1|C|174
9HMW|1|h1|A|175
9HMW|1|h1|A|176
9HMW|1|h1|C|177
9HMW|1|h1|A|178
9HMW|1|h1|A|179
9HMW|1|h1|A|180
9HMW|1|h1|C|181
9HMW|1|h1|C|182
*
9HMW|1|h1|G|198
9HMW|1|h1|A|199
9HMW|1|h1|C|200
9HMW|1|h1|G|201
*
9HMW|1|h1|C|264
9HMW|1|h1|G|265
9HMW|1|h1|G|266
*
9HMW|1|h1|C|291
9HMW|1|h1|G|292
9HMW|1|h1|C|293

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain Aa

Small ribosomal subunit protein eS8z

Chain Ja

Small ribosomal subunit protein eS4x

Chain Ta

Small ribosomal subunit protein eS6y