J5_9HY6_005
3D structure
- PDB id
- 9HY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCCC
- Length
- 42 nucleotides
- Bulged bases
- 9HY6|1|b|A|2448, 9HY6|1|b|U|2449, 9HY6|1|b|U|2609, 9HY6|1|b|C|2610
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HY6|1|b|G|2056
9HY6|1|b|G|2057
9HY6|1|b|A|2058
9HY6|1|b|A|2059
9HY6|1|b|A|2060
9HY6|1|b|G|2061
9HY6|1|b|A|2062
9HY6|1|b|C|2063
9HY6|1|b|C|2064
*
9HY6|1|b|G|2446
9HY6|1|b|G|2447
9HY6|1|b|A|2448
9HY6|1|b|U|2449
9HY6|1|b|A|2450
9HY6|1|b|A|2451
9HY6|1|b|C|2452
9HY6|1|b|A|2453
9HY6|1|b|G|2454
*
9HY6|1|b|C|2498
9HY6|1|b|C|2499
9HY6|1|b|U|2500
9HY6|1|b|C|2501
9HY6|1|b|G|2502
9HY6|1|b|A|2503
9HY6|1|b|U|2504
9HY6|1|b|G|2505
9HY6|1|b|U|2506
9HY6|1|b|C|2507
*
9HY6|1|b|G|2582
9HY6|1|b|G|2583
9HY6|1|b|U|2584
9HY6|1|b|U|2585
9HY6|1|b|U|2586
9HY6|1|b|A|2587
9HY6|1|b|G|2588
*
9HY6|1|b|C|2606
9HY6|1|b|G|2607
9HY6|1|b|G|2608
9HY6|1|b|U|2609
9HY6|1|b|C|2610
9HY6|1|b|C|2611
9HY6|1|b|C|2612
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL32
- Chain A
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
- Chain d
- 50S ribosomal protein L3
- Chain e
- Large ribosomal subunit protein uL4
- Chain l
- Large ribosomal subunit protein uL15
- Chain m
- 50S ribosomal protein L16
- Chain s
- Large ribosomal subunit protein uL22
- Chain v
- Transfer RNA; tRNA
- Chain y
- Large ribosomal subunit protein bL27
- Chain z
- Gelation factor
Coloring options: